Find Protein-Protein Interactions (PPI) Network

Choose & Enter
Choose animal: Visualization driver:
Protein/NCBI_ID(s):
Refseq_ID(s):
KEGG_KO(s):


Level of PPIs:
or Upload text file:
Update repository

Visible interactions: Visible interactors: Size of node:

Visualization interactions

Powered by Cytoscape Web taxid = 1026970 for: protein(s) Abcd2 (from a repository: Sat Apr 21 02:06:18 2018)
Examples

Cytoscape Web will replace the contents your graph
PPI Properties:

Click on nodes
or edges

Layout Tree
Circle
Radial
Force Directed
Preset
Export graph
PDF file
SVG file
SIF file
XML file
GraphML file

Statistics and Network structure information

Statistics of PPI Value(s)
The number of interactors (fusion and proteins)4
The number (and %) of the onco-proteins1 (25.00 %)
The number (and %) of the tumor suppressors0 (0.00 %)
Total number of binary PPIs (saturation %)6 (100.00 %)
The number (and %) of affected PPIs3 (50.00 %)
PPI diameter2
PPI radius1
The average degree of PPI2.500
Assortativity coefficient0
The network average Clustering coefficient0.833
The number (and %) of a zero Clustering coefficients0 (0.00 %)
The number (and %) of a zero Betweenness Centrality2 (50.00 %)

ACTIVE INTERACTORS


List of active interactors

Interactor,
Domain structure
Type Number
of PPI (degree)
Clustering
Coefficient
Betweenness
Centrality
Domains (Pfam ID): description
Abcd2
user protein30.6671.000ABC_membrane_2 (PF06472): ABC transporter transmembrane region 2
ABC_tran (PF00005): ABC transporter
RVP (PF00077): Retroviral aspartyl protease
Abcd1
interactor30.6671.000ABC_membrane_2 (PF06472): ABC transporter transmembrane region 2
ABC_tran (PF00005): ABC transporter
Ntrk1
oncogene31.0000LRR_8 (PF13855): Leucine rich repeat
TPKR_C2 (PF16920): Tyrosine-protein kinase receptor C2 Ig-like domain
Ig_3 (PF13927): Immunoglobulin domain
I-set (PF07679): Immunoglobulin I-set domain
Pkinase_Tyr (PF07714): Protein tyrosine kinase
Pex19
interactor21.0000Peptidase_M16_C (PF05193): Peptidase M16 inactive domain
Rod-binding (PF10135): Rod binding protein
Pex19 (PF04614): Pex19 protein family

B a c k    t o    T o p ⇑